Slightly more than 100,000 people in 3,867,271 km^2 of the 3 northern territories. (Just under half of Canada by area, bigger than India) It's going to be very hard to assert sovereignty when it's such a large area to monitor with so few people. For example a German weather station build in Labrador in 1943 wasn't found until the 1980s. Who knows what other countries are already doing in Canada's north.
These days we have remote sensing satellites, plus sophisticated software to analyze their data, so it would be quite a bit more difficult to do something big and go unnoticed.